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Publication

  • [11] Hisano Yajima, Yuki Anraku, Yu Kaku, Kanako Terakado Kimura, Arnon Plianchaisuk, Kaho Okumura, Yoshiko Nakada-Nakura, Yusuke Atarashi, Takuya Hemmi, Daisuke Kuroda, Yoshimasa Takahashi, Shunsuke Kita, Jiei Sasaki, Hiromi Sumita, The Genotype to Phenotype Japan (G2P-Japan) Consortium, Jumpei Ito, Katsumi Maenaka, Kei Sato†, and Takao Hashiguchi†. 2024. Structural basis for receptor-binding domain mobility of the spike in SARS-CoV-2 BA.2.86 and JN.1. Nature Communications. 15: 8754. doi: 10.1038/s41467-024-52808-2​

  • [10] Shuhei Tsujino*, Sayaka Deguchi*, Tomo Nomai*, Miguel Padilla-Blanco*, Arnon Plianchaisuk*, Lei Wang*, Mst. Monira Begum*, Keiya Uriu*, Keita Mizuma, Naganori Nao, Isshu Kojima, Tomoya Tsubo, Jingshu Li, Yasufumi Matsumura, Miki Nagao, Yoshitaka Oda, Masumi Tsuda, Yuki Anraku, Shunsuke Kita, Hisano Yajima, Kaori Sasaki-Tabata, Ziyi Guo, Alfredo A. Hinay Jr., Kumiko Yoshimatsu, Yuki Yamamoto, Tetsuharu Nagamoto, Hiroyuki Asakura, Mami Nagashima, Kenji Sadamasu, Kazuhisa Yoshimura, Hesham Nasser, Michael Jonathan, Olivia Putri, Yoonjin Kim, Luo Chen, Rigel Suzuki, Tomokazu Tamura, Katsumi Maenaka, The Genotype to Phenotype Japan (G2P-Japan) Consortium, Takashi Irie, Keita Matsuno, Shinya Tanaka, Jumpei Ito, Terumasa Ikeda†, Kazuo Takayama†, Jiri Zahradnik†, Takao Hashiguchi†, Takasuke Fukuhara†, and Kei Sato†. 2024. Virological characteristics of the SARS-CoV-2 Omicron EG.5.1 variant. Microbiology and Immunology. 68: 305–330. doi: 10.1111/1348-0421.13165

  • [9] Shigeru Fujita*, Arnon Plianchaisuk*, Sayaka Deguchi*, Hayato Ito*, Naganori Nao*, Lei Wang*, Hesham Nasser, Tomokazu Tamura, Izumi Kimura, Yukie Kashima, Rigel Suzuki, Saori Suzuki, Izumi Kida, Masumi Tsuda, Yoshitaka Oda, Rina Hashimoto, Yukio Watanabe, Keiya Uriu, Daichi Yamasoba, Ziyi Guo, Alfredo A. Hinay Jr., Yusuke Kosugi, Luo Chen, Lin Pan, Yu Kaku, Hin Chu, Flora Donati, Sarah Temmam, Marc Eloit, Yuki Yamamoto, Tetsuharu Nagamoto, Hiroyuki Asakura, Mami Nagashima, Kenji Sadamasu, Kazuhisa Yoshimura, Yutaka Suzuki, The Genotype to Phenotype Japan (G2P-Japan) Consortium, Jumpei Ito, Terumasa Ikeda, Shinya Tanaka†, Keita Matsuno†, Takasuke Fukuhara†, Kazuo Takayama†, and Kei Sato†. 2024. Virological characteristics of a SARS-CoV-2-related bat coronavirus, BANAL-20-236. eBioMedicine. 104: 105181. doi: 10.1016/j.ebiom.2024.105181

  • [8] Uddhav Timilsina, Emily B. Ivey, Sean Duffy, Arnon Plianchaisuk, The Genotype to Phenotype Japan (G2P-Japan) Consortium, Jumpei Ito, Kei Sato, and Spyridon Stavrou†. 2024. SARS-CoV-2 ORF7a mutation found in BF.5 and BF.7 sublineages impacts its functions. International Journal of Molecular Sciences. 25: 2351. doi: 10.3390/ijms25042351

  • [7] Tomokazu Tamura*, Takashi Irie*, Sayaka Deguchi*, Hisano Yajima*, Masumi Tsuda*, Hesham Nasser*, Keita Mizuma*, Arnon Plianchaisuk*, Saori Suzuki*, Keiya Uriu, Mst. Monira Begum, Ryo Shimizu, Michael Jonathan, Rigel Suzuki, Takashi Kondo, Hayato Ito, Akifumi Kamiyama, Kumiko Yoshimatsu, Maya Shofa, Rina Hashimoto, Yuki Anraku, Kanako Terakado Kimura, Shunsuke Kita, Jiei Sasaki, Kaori Sasaki-Tabata, Katsumi Maenaka, Naganori Nao, Lei Wang, Yoshitaka Oda, The Genotype to Phenotype Japan (G2P-Japan) Consortium, Terumasa Ikeda, Akatsuki Saito, Keita Matsuno, Jumpei Ito, Shinya Tanaka†, Kei Sato†, Takao Hashiguchi†, Kazuo Takayama†, and Takasuke Fukuhara†. 2024. Virological characteristics of the SARS-CoV-2 Omicron XBB.1.5 variant. Nature Communications. 15: 1176. doi: 10.1038/s41467-024-45274-3

  • [6] Yusuke Kosugi*, Arnon Plianchaisuk*, Olivia Putri*, Keiya Uriu, Yu Kaku, Alfredo A. Hinay Jr., Luo Chen, Jin Kuramochi, Kenji Sadamasu, Kazuhisa Yoshimura, Hiroyuki Asakura, Nagashima Mami, Jumpei Ito, The Genotype to Phenotype Japan (G2P-Japan) Consortium, and Kei Sato†. 2024. Characteristics of the SARS-CoV-2 omicron HK.3 variant harbouring the FLip substitution. Lancet Microbe. 5: e313. doi: 10.1016/S2666-5247(23)00373-7

  • [5] Yu Kaku*, Kaho Okumura*, Miguel Padilla-Branco, Yusuke Kosugi, Keiya Uriu, Alfredo A. Hinay Jr., Luo Chen, Arnon Plianchaisuk, Kouji Kobiyama, Ken J. Ishii, The Genotype to Phenotype Japan (G2P-Japan) Consortium, Jiri Zahradnik, Jumpei Ito, and Kei Sato†. 2024. Virological characteristics of the SARS-CoV-2 JN.1 variant. Lancet Infectious Diseases. 24: e82. doi: 10.1016/S1473-3099(23)00813-7

  • [4] Izumi Kimura*, Daichi Yamasoba*, Hesham Nasser*, Hayato Ito*, Jiri Zahradnik*, Jiaqi Wu*, Shigeru Fujita*, Keiya Uriu*, Jiei Sasaki, Tomokazu Tamura, Rigel Suzuki, Sayaka Deguchi, Arnon Plianchaisuk, Kumiko Yoshimatsu, Yasuhiro Kazuma, Shuya Mitoma, Gideon Schreiber, Hiroyuki Asakura, Mami Nagashima, Kenji Sadamasu, Kazuhisa Yoshimura, Akifumi Takaori-Kondo, The Genotype to Phenotype Japan (G2P-Japan) Consortium, Jumpei Ito, Kotaro Shirakawa, Kazuo Takayama, Takashi Irie, Takao Hashiguchi, So Nakagawa†, Takasuke Fukuhara†, Akatsuki Saito†, Terumasa Ikeda†, and Kei Sato†. 2023. Multiple mutations of SARS-CoV-2 Omicron BA.2 variant orchestrate its virological characteristics. Journal of Virology. 97: e0101123. doi: 10.1128/jvi.01011-23

  • [3] Daichi Yamasoba*, Keiya Uriu*, Arnon Plianchaisuk*, Yusuke Kosugi*, Lin Pan*, Jiri Zahradnik, The Genotype to Phenotype Japan (G2P-Japan) Consortium, Jumpei Ito, and Kei Sato†. 2023. Virological characteristics of the SARS-CoV-2 Omicron XBB.1.16 variant. Lancet Infectious Diseases. 23: 655–656. doi: 10.1016/S1473-3099(23)00278-5

  • [2] Arnon Plianchaisuk†, Kazuya Kusama, Kiyoko Kato, Sira Sriswasdi, Kazuhiro Tamura, and Wataru Iwasaki†. 2022. Origination of LTR retroelement-derived NYNRIN coincides with therian placental emergence. Molecular Biology and Evolution. 39: msac176. doi: 10.1093/molbev/msac176

  • [1] Ronnachit Deepankaew, Arnon Plianchaisuk, and Phonphop Naiyanetr†. 2015. Numerical Simulation of a Biventricular Assist Device with Pulsatile Control Operation for Bridge to Recovery. International Journal of Applied Biomedical Engineering. 8: 10–16.​​

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Preprint

  • [1] Yusuke Kosugi, Kanata Matsumoto, Spyros Lytras, Arnon Plianchaisuk, Jarel Elgin Tolentino, Shigeru Fujita, Maximilian Stanley Yo, Chen Luo, Yoonjin Kim, Wataru Shihoya, Jumpei Ito, Osamu Nureki, and Kei Sato†. 2025. Molecular basis of sarbecovirus evolution and receptor tropism in natural hosts, potential intermediate hosts, and humans. bioRxiv. doi: 10.1101/2025.03.22.644775

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Presentation

  • Arnon Plianchaisuk, Spyros Lytras, Adam Strange, Jumpei Ito, and Kei Sato. Predicting functional changes in mammalian proteins using the ESM-2 language model.

    • [Poster] Virus, Genomics, Evolution and Bioinformatics 2024,​ Cambridge, UK. November 6-8, 2024.

  • Arnon Plianchaisuk*, Shigeru Fujita*, Sayaka Deguchi*, Hayato Ito*, Naganori Nao*, Lei Wang*, Hesham Nasser, Tomokazu Tamura, Izumi Kimura, Yukie Kashima, Rigel Suzuki, Saori Suzuki, Izumi Kida, Masumi Tsuda, Yoshitaka Oda, Rina Hashimoto, Yukio Watanabe, Keiya Uriu, Daichi Yamasoba, Ziyi Guo, Alfredo A. Hinay Jr., Yusuke Kosugi, Luo Chen, Lin Pan, Yu Kaku, Hin Chu, Flora Donati, Sarah Temmam, Marc Eloit, Yuki Yamamoto, Tetsuharu Nagamoto, Hiroyuki Asakura, Mami Nagashima, Kenji Sadamasu, Kazuhisa Yoshimura, Yutaka Suzuki, The Genotype to Phenotype Japan (G2P-Japan) Consortium, Jumpei Ito, Terumasa Ikeda, Shinya Tanaka†, Keita Matsuno†, Takasuke Fukuhara†, Kazuo Takayama†, and Kei Sato†. BANAL-20-236, a SARS-CoV-2-related bat coronavirus, exhibits different virological characteristics and infection tropism compared to SARS-CoV-2.

    • [Oral] The 2nd Meeting on Novel Coronavirus (第2回 新型コロナウイルス研究集会​), Tokyo, Japan. August 2-4, 2024.

  • Arnon Plianchaisuk, Daichi Yamasoba, Keiya Uriu, Yusuke Kosugi, Lin Pan, Jiri Zahradnik, The Genotype to Phenotype Japan (G2P-Japan) Consortium, Jumpei Ito, and Kei Sato. Virological characteristics of the SARS-CoV-2 Omicron XBB.1.16 variant.

    • [Poster] The 70th Annual Meeting of the Japanese Society for Virology, Miyagi, Japan. September 26-28, 2023.

    • [Poster] The 21st Awaji International Forum on Infection and Immunity, Nagano, Japan. September 3-6, 2023.

    • [Poster] The 17th Virus Camp in Yugawara, Kanagawa, Japan. June 26-27, 2023.  

  • Arnon Plianchaisuk. 2021. Bioinformatics in evolutionary biology: Comprehensive analyses reveal potential roles of LTR retrotransposons in functional evolution of mammalian placenta.

    • [Invited speaker] Special webinar: Invited speakers from outstanding universities, Department of Biology, Ramkhamhaeng University, Bangkok, Thailand. [Virtual]. January 11, 2021

  • Arnon Plianchaisuk, Kazuya Kusama, Kazuhiro Tamura, and Wataru Iwasaki. 2020. Comprehensive analyses reveal potential roles of LTR retrotransposons in functional evolution of mammalian placenta.

    • [Oral] The 1st Virology Meeting for Early Career Researchers, Tokyo, Japan. [Virtual]. December 18-19, 2020.

    • [Oral] The 4th Tokyo Bioinformatics Meeting, Tokyo, Japan. [Virtual]. October 24, 2020.

  • Arnon Plianchaisuk, Sitthiporn Pattaradilokrat, Narattaphol Charoenphandhu, Wacharaporn Tiyasatkulkovit, and Suchinda Malaivijitnond. 2015. Mechanism of action of puerarin phytoestrogen on osteoblast differentiation.

    • [Poster] The 10th Conference on Science and Technology for Youths, Kasetsart University, Bangkok, Thailand. June 19-20, 2015.

 

* co-first author

† corresponding author

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